PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.5G130300.1.p
Common NamePRUPE_ppa022201mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 476aa    MW: 53525.2 Da    PI: 7.4456
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.5G130300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.67.9e-12296342455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h e+Er+RR+++N++f  Lr+++P+       K++ ++ L  Av YI++L+
  Prupe.5G130300.1.p 296 NHVEAERQRREKLNHRFYALRSVVPNV-----SKMDRSSLLADAVAYINQLK 342
                         799***********************6.....5*****************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.2E-3922211IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.158292341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-16292355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.14E-12295346No hitNo description
Gene3DG3DSA:4.10.280.107.2E-16296354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-9296341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-14298347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MEEIIPSSSP PQLCQENSVS FQQRLQFIVQ NRPEWWVYSI FWQASKDSND QVALSWAGGH  60
CKSPRDLASK RSNKMVNNKH FVERKKVINN REAESLFHEE MDLDMRLVDH VVGDVTDSEW  120
FYFYSISLTQ SFVAGHATNN ILGRSFCSGG FVWLAGDHEL QFYECERVKK ARMHGIQSLV  180
CIATPCGVLE LASPDVIKED LGLVHLSKSL FLSDNNRVSK QDSRDVNALV PPLESGMFSG  240
GQKDLTKQGD TKEAAPINIG GSSSDSADNF TSDNTESTRM KTRGRSSSNH APQLLNHVEA  300
ERQRREKLNH RFYALRSVVP NVSKMDRSSL LADAVAYINQ LKAKTEELED KIQSQPQNPK  360
RGNVSNADHH HYSQSTSPIV DFHHSNNNNT NRAAAALEVD VKILGSEAVI RVQCPDQEYP  420
YAKLMNALKS LRLQVCHASI SNVKDLMIQN VVVRVPYGFI SDEAMRMGII KKWYN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A4e-28152113192Transcription factor MYC3
4rqw_B4e-28152113192Transcription factor MYC3
4rs9_A4e-28152113192Transcription factor MYC3
4yz6_A4e-28152113192Transcription factor MYC3
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppe.135945e-31fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007210118.10.0hypothetical protein PRUPE_ppa022201mg
TrEMBLM5WC300.0M5WC30_PRUPE; Uncharacterized protein
STRINGPOPTR_0001s11400.11e-134(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.13e-57bHLH family protein